If you adore the classic taste of apple pie but want something perfectly portable and a bit more fun, then you are going to fall head over heels for this Apple Pie Cupcakes Recipe. These delightful cupcakes capture all the cozy, spiced apple goodness you crave, wrapped up in moist cake layers and topped with a cinnamon-sugar finish that’s simply irresistible. Whether you’re baking for a family gathering, a festive party, or just a special treat on a regular day, this recipe is a guaranteed crowd-pleaser that brings that warm, homemade apple pie magic into every bite.

Ingredients You’ll Need
The magic behind this recipe lies in its straightforward ingredients that each play a vital role in flavor, texture, and that comforting aroma. From fresh apples that add juiciness and a bit of tang to the perfectly spiced cake base, each component works in harmony to create cupcakes that taste like a slice of apple pie but with a fun, handheld twist.
- 2 medium apples (such as Granny Smith or Honeycrisp): These provide just the right balance of tart and sweet, lending fresh fruit flavor and texture.
- 2 tbsp unsalted butter: Used to sauté the apples, adding richness and depth to the filling.
- 1/4 cup brown sugar: Adds warmth and caramel notes to the apple filling.
- 1/2 tsp ground cinnamon: The essential spice that gives apple desserts their signature cozy flavor.
- 1/4 tsp ground nutmeg: A subtle, nutty spice that complements cinnamon perfectly.
- 1 tbsp lemon juice: Brightens the apple filling and balances the sweetness.
- 1 1/2 cups all-purpose flour: The base of the cupcake batter, ensuring a tender crumb.
- 1 tsp baking powder: Helps the cupcakes rise beautifully and stay fluffy.
- 1/2 tsp baking soda: Works with the acidic elements to give lift and lightness.
- 1/4 tsp salt: Enhances all the flavors in the batter.
- 1/2 tsp ground cinnamon: Added to the batter for a subtle spice infusion.
- 1/4 tsp ground nutmeg: Provides a warm, aromatic layer to the cake.
- 1/2 cup unsalted butter, softened: Creamed with sugar to give the cupcakes moisture and richness.
- 1 cup granulated sugar: Sweetens the batter to perfection.
- 2 large eggs: Bind everything together and contribute to the cupcakes’ tender texture.
- 1 tsp vanilla extract: Adds a hint of sweetness and depth to the flavor.
- 1/2 cup whole milk: Moistens the batter while keeping it rich and creamy.
- 2 tbsp unsalted butter, melted: Used to finish the cupcakes with a cinnamon-sugar topping.
- 1/4 cup granulated sugar: For the crisp, sugary topping.
- 1 tsp ground cinnamon: Mixed with sugar to sprinkle over the tops.
How to Make Apple Pie Cupcakes Recipe
Step 1: Prepare the Apple Filling
Start by peeling, coring, and dicing your apples into small, even pieces to ensure they cook uniformly. This fruit is the star ingredient and will provide natural juiciness and sweetness to your cupcakes.
Step 2: Cook the Apples
In a skillet, melt 2 tablespoons of unsalted butter over medium heat. Add the diced apples along with brown sugar, cinnamon, nutmeg, and lemon juice. Stir occasionally, letting the apples soften for 5 to 7 minutes until tender but still holding their shape. This keeps the filling fresh and textured, not mushy. Once done, remove from heat and allow it to cool completely before adding to your batter.
Step 3: Preheat and Prepare the Pan
Get your oven ready by preheating to 350°F (175°C) and line a 12-cup muffin tin with cupcake liners. This is essential for even baking and easy cupcake removal once they’re done.
Step 4: Mix the Dry Ingredients
In a medium bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg. Combining these ingredients separately prevents uneven spice distribution and ensures your cupcakes have a consistent texture.
Step 5: Cream Butter and Sugar
In a large bowl, use a hand mixer or stand mixer to cream the softened butter with granulated sugar until the mixture is light, fluffy, and pale in color—about 2 to 3 minutes. This step is key to achieving a tender crumb because it incorporates air into the batter.
Step 6: Add Eggs and Vanilla
Beat in the eggs one at a time, fully incorporating each before adding the next. Then, mix in the vanilla extract. This combination provides structure and rich flavor to your apple pie cupcakes.
Step 7: Combine Wet and Dry Mixtures
Alternately add the dry ingredients and the milk to your creamed butter mixture, starting and ending with the dry ingredients. Mix gently and just until combined to avoid overworking the batter, which can make cupcakes tough.
Step 8: Fill Cupcake Liners Partially
Spoon about a tablespoon of cupcake batter into each liner, creating the first cake layer that cushions the apple filling.
Step 9: Add the Apple Filling
Add approximately 1 to 2 tablespoons of the cooled apple filling on top of the batter in each cupcake liner. The filling stays wonderfully moist inside the cake and bursts with caramelized apple flavor in every bite.
Step 10: Top with More Batter
Cover the apples with another tablespoon or so of cupcake batter. This layering method keeps the apples perfectly encased and creates a balanced bite of cake and fruit.
Step 11: Smooth the Tops and Bake
Gently smooth the tops with a spatula for an even surface. Then, bake at 350°F (175°C) until a toothpick inserted into the cake portion (avoiding the apples) comes out clean, usually about 18 to 22 minutes. The result is moist, fluffy cupcakes bursting with apple pie flavors!
How to Serve Apple Pie Cupcakes Recipe

Garnishes
For an inviting finish, lightly brush each cupcake top with melted butter, then sprinkle with a cinnamon-sugar blend before or immediately after baking to create a sweet, slightly crunchy crust. You can also add a small dollop of whipped cream or a dusting of powdered sugar for an extra-special touch that complements the cinnamon-spiced apples.
Side Dishes
These cupcakes are fantastic on their own, but if you’re serving them as part of a dessert spread, try pairing them with a scoop of vanilla ice cream or a drizzle of caramel sauce. A generous mug of hot apple cider or a chai latte also beautifully complements the warm spices in the cupcakes.
Creative Ways to Present
Consider serving your Apple Pie Cupcakes at a brunch with mini signs labeling the spice notes or placing them on a rustic wooden board with fresh apple slices around. For parties, how about turning them into cupcake bites by cutting each into halves or thirds, perfect for grazing? Wrapping them in parchment or placing them in decorative cupcake boxes also makes a charming gift idea for friends and family.
Make Ahead and Storage
Storing Leftovers
Leftover Apple Pie Cupcakes keep wonderfully in an airtight container at room temperature for 2 to 3 days, keeping their moisture and spice perfectly intact. If your home tends to be warm, storing them in the fridge is fine, but be sure to bring them to room temperature before serving to enjoy the best flavors.
Freezing
You can freeze these cupcakes for longer storage by wrapping each individually in plastic wrap and placing them in a freezer-safe container or bag. They freeze well for up to 2 months. To thaw, pop them in the refrigerator overnight or let them sit on the counter for a couple of hours before serving.
Reheating
To enjoy them warm and fresh-tasting, reheat cupcakes briefly in the microwave for 15 to 20 seconds or in a low oven (around 300°F or 150°C) for about 10 minutes. Warming gently enhances the apple aroma and softens the cake even more, reviving that just-baked feeling.
FAQs
Can I use different types of apples for this recipe?
Absolutely! Granny Smith and Honeycrisp are fantastic for their balance of tartness and sweetness, but feel free to experiment with your favorite apple varieties. Just be sure to choose apples that hold their shape well when cooked to avoid a mushy filling.
Is it possible to make these cupcakes dairy-free?
Yes, you can substitute the butter with a dairy-free margarine or coconut oil, and use a plant-based milk like almond or oat milk. Keep in mind that the flavor and texture will vary slightly, but they will still be delicious!
How long do the Apple Pie Cupcakes take to bake?
The baking time is usually between 18 and 22 minutes. The best way to check doneness is by inserting a toothpick into the cake portion (avoiding the apple filling). When it comes out clean or with a few moist crumbs, they’re ready.
Can I add nuts or raisins to the apple filling?
Definitely! Adding chopped walnuts, pecans, or a handful of raisins will add interesting texture and boost the flavor profile. Just toss them in with the apple mixture when cooking so they blend nicely.
What is the best way to prevent the apples from browning before cooking?
Dipping the diced apples in lemon juice helps prevent browning and adds a subtle brightness that balances the sweet spices perfectly.
Final Thoughts
There is something truly special about the way these Apple Pie Cupcakes Recipe comes together to capture the comforting spirit of fall in such a delightful little package. They’re easy to make, satisfying to eat, and great for sharing with anyone who appreciates a classic flavor with a fun twist. I promise once you try them, this recipe will become a beloved staple whenever you crave that perfect apple pie memory baked into a treat that’s all your own. So go ahead, bake a batch, and enjoy every bite of these heartwarming cupcakes!
Print
Apple Pie Cupcakes Recipe
- Prep Time: 20 minutes
- Cook Time: 25 minutes
- Total Time: 45 minutes
- Yield: 12 cupcakes (12 servings)
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
Delicious Apple Pie Cupcakes combine the classic flavors of apple pie with the convenience of a cupcake. Soft, spiced apple chunks are folded into a moist vanilla cinnamon batter, baked to perfection, and topped with a cinnamon sugar butter glaze. Perfect for dessert or a cozy snack.
Ingredients
Apple Filling
- 2 medium apples (such as Granny Smith or Honeycrisp), peeled, cored, and diced
- 2 tbsp unsalted butter
- 1/4 cup brown sugar
- 1/2 tsp ground cinnamon
- 1/4 tsp ground nutmeg
- 1 tbsp lemon juice
Cupcake Batter
- 1 1/2 cups all-purpose flour
- 1 tsp baking powder
- 1/2 tsp baking soda
- 1/4 tsp salt
- 1/2 tsp ground cinnamon
- 1/4 tsp ground nutmeg
- 1/2 cup unsalted butter, softened
- 1 cup granulated sugar
- 2 large eggs
- 1 tsp vanilla extract
- 1/2 cup whole milk
Topping
- 2 tbsp unsalted butter, melted
- 1/4 cup granulated sugar
- 1 tsp ground cinnamon
Instructions
- Prepare the Apple Filling: In a medium saucepan over medium heat, melt 2 tablespoons of unsalted butter. Add the diced apples, brown sugar, cinnamon, nutmeg, and lemon juice. Cook for about 5-7 minutes, stirring occasionally, until the apples are tender but still maintain their shape. Remove from heat and set aside to cool.
- Preheat Oven and Line Muffin Tin: Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with cupcake liners to prepare for baking.
- Mix Dry Ingredients: In a medium bowl, combine the all-purpose flour, baking powder, baking soda, salt, cinnamon, and nutmeg. Set aside.
- Cream Butter and Sugar: In a large bowl, cream together the softened butter and granulated sugar using a mixer until light and fluffy, about 2-3 minutes.
- Add Eggs and Vanilla: Add the eggs one at a time, beating well after each addition. Stir in the vanilla extract until incorporated.
- Combine Wet and Dry Ingredients: Gradually add the dry ingredients to the wet ingredients, alternating with milk, beginning and ending with the dry ingredients. Mix until just combined, avoiding overmixing to maintain a tender texture.
- Fill Muffin Cups – First Layer: Spoon about 1-2 tablespoons of the cupcake batter into each prepared muffin cup, filling about halfway.
- Add Apple Filling: Place a spoonful (about 1-2 tablespoons) of the cooled apple filling onto the batter layer in each muffin cup, distributing evenly.
- Fill Muffin Cups – Top Layer: Top the apple filling with about another tablespoon of cupcake batter, covering the apples completely.
- Smooth Tops: Gently smooth the tops of each cupcake with a spatula to ensure even baking.
- Prepare the Cinnamon Sugar Topping: In a small bowl, combine the melted butter, granulated sugar, and ground cinnamon. After baking, this mixture can be brushed or sprinkled on top of the warm cupcakes if desired.
- Bake: Bake the cupcakes in the preheated oven for about 20-25 minutes, or until a toothpick inserted into the center comes out clean. Let cool in the pan for 5 minutes before transferring to a wire rack to cool completely.
Notes
- Use tart apples like Granny Smith or Honeycrisp for the best balance of flavor and texture.
- Do not overmix the batter to keep the cupcakes tender.
- The cinnamon sugar topping can be applied after baking while the cupcakes are still warm for extra flavor.
- Cupcakes can be stored in an airtight container at room temperature for up to 3 days or refrigerated for up to a week.
- For a dairy-free version, substitute the butter and milk with plant-based alternatives.

